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Characterization of Indole-3-acetic Acid Biosynthesis and the Effects of This Phytohormone on the Proteome of the Plant-Associated Microbe Pantoea sp. YR343.

Identifieur interne : 001006 ( Main/Exploration ); précédent : 001005; suivant : 001007

Characterization of Indole-3-acetic Acid Biosynthesis and the Effects of This Phytohormone on the Proteome of the Plant-Associated Microbe Pantoea sp. YR343.

Auteurs : Kasey Estenson [États-Unis] ; Gregory B. Hurst ; Robert F. Standaert [États-Unis] ; Amber N. Bible [États-Unis] ; David Garcia [États-Unis] ; Karuna Chourey ; Mitchel J. Doktycz [États-Unis] ; Jennifer L. Morrell-Falvey [États-Unis]

Source :

RBID : pubmed:29464956

Descripteurs français

English descriptors

Abstract

Indole-3-acetic acid (IAA) plays a central role in plant growth and development, and many plant-associated microbes produce IAA using tryptophan as the precursor. Using genomic analyses, we predicted that Pantoea sp. YR343, a microbe isolated from Populus deltoides, synthesizes IAA using the indole-3-pyruvate (IPA) pathway. To better understand IAA biosynthesis and the effects of IAA exposure on cell physiology, we characterized proteomes of Pantoea sp. YR343 grown in the presence of tryptophan or IAA. Exposure to IAA resulted in upregulation of proteins predicted to function in carbohydrate and amino acid transport and exopolysaccharide (EPS) biosynthesis. Metabolite profiles of wild-type cells showed the production of IPA, IAA, and tryptophol, consistent with an active IPA pathway. Finally, we constructed an Δ ipdC mutant that showed the elimination of tryptophol, consistent with a loss of IpdC activity, but was still able to produce IAA (20% of wild-type levels). Although we failed to detect intermediates from other known IAA biosynthetic pathways, this result suggests the possibility of an alternate pathway or the production of IAA by a nonenzymatic route in Pantoea sp. YR343. The Δ ipdC mutant was able to efficiently colonize poplar, suggesting that an active IPA pathway is not required for plant association.

DOI: 10.1021/acs.jproteome.7b00708
PubMed: 29464956


Affiliations:


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Le document en format XML

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<term>Biosynthetic Pathways (MeSH)</term>
<term>Indoleacetic Acids (pharmacology)</term>
<term>Pantoea (chemistry)</term>
<term>Plant Growth Regulators (biosynthesis)</term>
<term>Plant Growth Regulators (pharmacology)</term>
<term>Plant Proteins (drug effects)</term>
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<term>Acides indolacétiques (pharmacologie)</term>
<term>Facteur de croissance végétal (biosynthèse)</term>
<term>Facteur de croissance végétal (pharmacologie)</term>
<term>Pantoea (composition chimique)</term>
<term>Populus (composition chimique)</term>
<term>Populus (microbiologie)</term>
<term>Protéines végétales (effets des médicaments et des substances chimiques)</term>
<term>Protéome (effets des médicaments et des substances chimiques)</term>
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<div type="abstract" xml:lang="en">Indole-3-acetic acid (IAA) plays a central role in plant growth and development, and many plant-associated microbes produce IAA using tryptophan as the precursor. Using genomic analyses, we predicted that Pantoea sp. YR343, a microbe isolated from Populus deltoides, synthesizes IAA using the indole-3-pyruvate (IPA) pathway. To better understand IAA biosynthesis and the effects of IAA exposure on cell physiology, we characterized proteomes of Pantoea sp. YR343 grown in the presence of tryptophan or IAA. Exposure to IAA resulted in upregulation of proteins predicted to function in carbohydrate and amino acid transport and exopolysaccharide (EPS) biosynthesis. Metabolite profiles of wild-type cells showed the production of IPA, IAA, and tryptophol, consistent with an active IPA pathway. Finally, we constructed an Δ ipdC mutant that showed the elimination of tryptophol, consistent with a loss of IpdC activity, but was still able to produce IAA (20% of wild-type levels). Although we failed to detect intermediates from other known IAA biosynthetic pathways, this result suggests the possibility of an alternate pathway or the production of IAA by a nonenzymatic route in Pantoea sp. YR343. The Δ ipdC mutant was able to efficiently colonize poplar, suggesting that an active IPA pathway is not required for plant association.</div>
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<QualifierName UI="Q000096" MajorTopicYN="N">biosynthesis</QualifierName>
<QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D020543" MajorTopicYN="N">Proteome</DescriptorName>
<QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="Y">Pantoea sp. YR343</Keyword>
<Keyword MajorTopicYN="Y">indole-3-acetic acid</Keyword>
<Keyword MajorTopicYN="Y">indole-3-pyruvate decarboxylase</Keyword>
<Keyword MajorTopicYN="Y">plant colonization</Keyword>
<Keyword MajorTopicYN="Y">poplar</Keyword>
<Keyword MajorTopicYN="Y">tryptophol</Keyword>
</KeywordList>
</MedlineCitation>
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<PubMedPubDate PubStatus="pubmed">
<Year>2018</Year>
<Month>2</Month>
<Day>22</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2019</Year>
<Month>6</Month>
<Day>4</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2018</Year>
<Month>2</Month>
<Day>22</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">29464956</ArticleId>
<ArticleId IdType="doi">10.1021/acs.jproteome.7b00708</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>États-Unis</li>
</country>
</list>
<tree>
<noCountry>
<name sortKey="Chourey, Karuna" sort="Chourey, Karuna" uniqKey="Chourey K" first="Karuna" last="Chourey">Karuna Chourey</name>
<name sortKey="Hurst, Gregory B" sort="Hurst, Gregory B" uniqKey="Hurst G" first="Gregory B" last="Hurst">Gregory B. Hurst</name>
</noCountry>
<country name="États-Unis">
<noRegion>
<name sortKey="Estenson, Kasey" sort="Estenson, Kasey" uniqKey="Estenson K" first="Kasey" last="Estenson">Kasey Estenson</name>
</noRegion>
<name sortKey="Bible, Amber N" sort="Bible, Amber N" uniqKey="Bible A" first="Amber N" last="Bible">Amber N. Bible</name>
<name sortKey="Doktycz, Mitchel J" sort="Doktycz, Mitchel J" uniqKey="Doktycz M" first="Mitchel J" last="Doktycz">Mitchel J. Doktycz</name>
<name sortKey="Doktycz, Mitchel J" sort="Doktycz, Mitchel J" uniqKey="Doktycz M" first="Mitchel J" last="Doktycz">Mitchel J. Doktycz</name>
<name sortKey="Garcia, David" sort="Garcia, David" uniqKey="Garcia D" first="David" last="Garcia">David Garcia</name>
<name sortKey="Morrell Falvey, Jennifer L" sort="Morrell Falvey, Jennifer L" uniqKey="Morrell Falvey J" first="Jennifer L" last="Morrell-Falvey">Jennifer L. Morrell-Falvey</name>
<name sortKey="Morrell Falvey, Jennifer L" sort="Morrell Falvey, Jennifer L" uniqKey="Morrell Falvey J" first="Jennifer L" last="Morrell-Falvey">Jennifer L. Morrell-Falvey</name>
<name sortKey="Standaert, Robert F" sort="Standaert, Robert F" uniqKey="Standaert R" first="Robert F" last="Standaert">Robert F. Standaert</name>
<name sortKey="Standaert, Robert F" sort="Standaert, Robert F" uniqKey="Standaert R" first="Robert F" last="Standaert">Robert F. Standaert</name>
</country>
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</affiliations>
</record>

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